PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_21966.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 296aa    MW: 32701.9 Da    PI: 5.3897
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_21966.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM91.91.1e-28221651128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.........tksgy 82 
                   lp+G++F+Ptd el+ e+L+ kv +   ++       +i+e+ +i++++P++Lp  vk +    +fF+k +++y  gkrk+r+          +  +
  MLOC_21966.2  22 LPAGVKFDPTDLELL-EHLEGKVGRAASHVLXxxfipTIEEAeGICYTHPENLP-GVKLDGIASHFFHKISNAYDVGKRKRRKishsdhtvcDEILR 116
                   799************.99*****999944433344435888878**********.566677899******************867777665433557 PP

           NAM  83 WkatgkdkevlskkgelvglkktLvfy...kgrapkgektdWvmheyrl 128
                   W++tgk++++l+++g  +g kk+Lv+y   ++   k++kt+W mh+y+l
  MLOC_21966.2 117 WHKTGKSRSILDSNGVIKGWKKILVLYigsRKGGGKTVKTNWRMHQYHL 165
                   ***************************443333345579********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-337184IPR003441NAC domain
PROSITE profilePS5100528.25722184IPR003441NAC domain
PfamPF023651.9E-1223165IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MECPNCKYCI DNTDVLSQWP GLPAGVKFDP TDLELLEHLE GKVGRAASHV LXXXFIPTIE  60
EAEGICYTHP ENLPGVKLDG IASHFFHKIS NAYDVGKRKR RKISHSDHTV CDEILRWHKT  120
GKSRSILDSN GVIKGWKKIL VLYIGSRKGG GKTVKTNWRM HQYHLGVDQD EKQEELVVSK  180
VFYQLESNNA GENDPTTPIT YLPQPRRPNG SPSTTEQNQE GESRMSTVRE AVEWLAGSSS  240
HTVEDAVVSG LDEDLSRGRT PDAACPDPEG QLLPLDAEAP QGFADDLGAP PDISLP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196101KRKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3577630.0AK357763.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1061G08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581357.21e-108PREDICTED: NAC domain-containing protein 8-like
SwissprotQ6NQK21e-65NAC8_ARATH; NAC domain-containing protein 8
TrEMBLM0VBR80.0M0VBR8_HORVD; Uncharacterized protein
STRINGMLOC_21966.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21103799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.18e-67NAC family protein